The latest issue of DWM has listed the top 200 storys, here are 101-150.

101. Full Circle.
102. Mawdryn Undead.
103. The Sontaran Experiment.
104. Frontios.
105. The Ribos Operation.
106. Robot.
107. The Next Doctor.
108. The War Machines.
109. The Pirate Planet.
110. The Awakening.
111. The Seeds of Death.
112. The Moonbase.
113. Frontier in Space.
114. Voyage of the Damned.
115. The Runaway Bride.
116. The Face of Evil.
117. Black Orchid.
118. Planet of the Daleks.
119. The Greatest Show in the Galaxy.
120. Snakedance.
121. Destiny of the Daleks.
122. The Faceless Ones.
123. The Android Invasion.
124. Vengeance on Varos.
125. The Two Doctors.
126. The Myth Makers.
127. The Rescue.
128. Death to the Daleks.
129. The Claws of Axos.
130. Revenge of the Cybermen.
131. Invasion of the Dinosaurs.
132. Aliens of London.
133. Mission to the Unknown.
134. Planet of Fire.
135. Doctor Who The TV Movie.
136. 42.
137. The Macra Terror.
138. The Idiots Lantern.
139. The Enemy of the World.
140. The Doctors Daughter.
141. Boom Town.
142. The Trial of a Time Lord.
143. New Earth.
144. The Reign of Terror.
145. The Highlanders.
146. Battlefield.
147. The Sun Makers.
148. The Mark of the Rani.
149. The Leisure Hive.
150. The Lazarus Experiment.

The last 50 will be up later :)